RustFungiGenomicsV1, Main, Exploration, bibRecord, 000247

Saturated genic SNP mapping identified functional candidates and selection tools for the Pinus monticola Cr2 locus controlling resistance to white pine blister rust.

Identifieur interne : 000247 ( Main/Exploration ); précédent : 000246; suivant : 000248

Saturated genic SNP mapping identified functional candidates and selection tools for the Pinus monticola Cr2 locus controlling resistance to white pine blister rust.

Auteurs : Jun-Jun Liu [Canada] ; Richard A. Sniezko [États-Unis] ; Arezoo Zamany [Canada] ; Holly Williams [Canada] ; Ning Wang [Canada, République populaire de Chine] ; Angelia Kegley [États-Unis] ; Douglas P. Savin [États-Unis] ; Hao Chen [Canada] ; Rona N. Sturrock [Canada]

Source :

Plant biotechnology journal [ 1467-7652 ] ; 2017.

RBID : pubmed:28176454

Descripteurs français

KwdFr :
- Analyse de profil d'expression de gènes (MeSH), Basidiomycota (physiologie), Cartographie chromosomique (MeSH), Gene Ontology (MeSH), Graines (génétique), Graines (immunologie), Graines (microbiologie), Génotype (MeSH), Liaison génétique (MeSH), Locus génétiques (génétique), Maladies des plantes (immunologie), Maladies des plantes (microbiologie), Pinus (génétique), Pinus (immunologie), Pinus (microbiologie), Polymorphisme de nucléotide simple (génétique), Protéines végétales (génétique), Protéines végétales (métabolisme), Résistance à la maladie (génétique), Sélection (MeSH), Transcriptome (MeSH).
MESH :
- génétique : Graines, Locus génétiques, Pinus, Polymorphisme de nucléotide simple, Protéines végétales, Résistance à la maladie.
- immunologie : Graines, Maladies des plantes, Pinus.
- microbiologie : Graines, Maladies des plantes, Pinus.
- métabolisme : Protéines végétales.
- physiologie : Basidiomycota.
- Analyse de profil d'expression de gènes, Cartographie chromosomique, Gene Ontology, Génotype, Liaison génétique, Sélection, Transcriptome.

English descriptors

KwdEn :
- Basidiomycota (physiology), Breeding (MeSH), Chromosome Mapping (MeSH), Disease Resistance (genetics), Gene Expression Profiling (MeSH), Gene Ontology (MeSH), Genetic Linkage (MeSH), Genetic Loci (genetics), Genotype (MeSH), Pinus (genetics), Pinus (immunology), Pinus (microbiology), Plant Diseases (immunology), Plant Diseases (microbiology), Plant Proteins (genetics), Plant Proteins (metabolism), Polymorphism, Single Nucleotide (genetics), Seeds (genetics), Seeds (immunology), Seeds (microbiology), Transcriptome (MeSH).
MESH :
- chemical , genetics : Plant Proteins.
- genetics : Disease Resistance, Genetic Loci, Pinus, Polymorphism, Single Nucleotide, Seeds.
- immunology : Pinus, Plant Diseases, Seeds.
- chemical , metabolism : Plant Proteins.
- microbiology : Pinus, Plant Diseases, Seeds.
- physiology : Basidiomycota.
- Breeding, Chromosome Mapping, Gene Expression Profiling, Gene Ontology, Genetic Linkage, Genotype, Transcriptome.

Abstract

Molecular breeding incorporates efficient tools to increase rust resistance in five-needle pines. Susceptibility of native five-needle pines to white pine blister rust (WPBR), caused by the non-native invasive fungus Cronartium ribicola (J.C. Fisch.), has significantly reduced wild populations of these conifers in North America. Major resistance (R) genes against specific avirulent pathotypes have been found in several five-needle pine species. In this study, we screened genic SNP markers by comparative transcriptome and genetic association analyses and constructed saturated linkage maps for the western white pine (Pinus monticola) R locus (Cr2). Phenotypic segregation was measured by a hypersensitive reaction (HR)-like response on the needles and disease symptoms of cankered stems post inoculation by the C. ribicola avcr2 race. SNP genotypes were determined by HRM- and TaqMan-based SNP genotyping. Saturated maps of the Cr2-linkage group (LG) were constructed in three seed families using a total of 34 SNP markers within 21 unique genes. Cr2 was consistently flanked by contig_2142 (encoding a ruvb-like protein) and contig_3772 (encoding a delta-fatty acid desaturase) across the three seed families. Cr2 was anchored to the Pinus consensus LG-1, which differs from LGs where other R loci of Pinus species were mapped. GO annotation identified a set of NBS-LRR and other resistance-related genes as R candidates in the Cr2 region. Association of one nonsynonymous SNP locus of an NBS-LRR gene with Cr2-mediated phenotypes provides a valuable tool for marker-assisted selection (MAS), which will shorten the breeding cycle of resistance screening and aid in the restoration of WPBR-disturbed forest ecosystems.

DOI: 10.1111/pbi.12705
PubMed: 28176454
PubMed Central: PMC5552481

Affiliations:

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 000313
to stream Main, to step Curation: 000313

Le document en format XML

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<term>Disease Resistance (genetics)</term>
<term>Gene Expression Profiling (MeSH)</term>
<term>Gene Ontology (MeSH)</term>
<term>Genetic Linkage (MeSH)</term>
<term>Genetic Loci (genetics)</term>
<term>Genotype (MeSH)</term>
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<term>Pinus (immunology)</term>
<term>Pinus (microbiology)</term>
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<term>Plant Diseases (microbiology)</term>
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<term>Basidiomycota (physiologie)</term>
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<term>Gene Ontology (MeSH)</term>
<term>Graines (génétique)</term>
<term>Graines (immunologie)</term>
<term>Graines (microbiologie)</term>
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<term>Liaison génétique (MeSH)</term>
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<term>Maladies des plantes (immunologie)</term>
<term>Maladies des plantes (microbiologie)</term>
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<term>Pinus (immunologie)</term>
<term>Pinus (microbiologie)</term>
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<term>Genetic Loci</term>
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<term>Seeds</term>
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<term>Polymorphisme de nucléotide simple</term>
<term>Protéines végétales</term>
<term>Résistance à la maladie</term>
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<front><div type="abstract" xml:lang="en">Molecular breeding incorporates efficient tools to increase rust resistance in five-needle pines. Susceptibility of native five-needle pines to white pine blister rust (WPBR), caused by the non-native invasive fungus Cronartium ribicola (J.C. Fisch.), has significantly reduced wild populations of these conifers in North America. Major resistance (R) genes against specific avirulent pathotypes have been found in several five-needle pine species. In this study, we screened genic SNP markers by comparative transcriptome and genetic association analyses and constructed saturated linkage maps for the western white pine (Pinus monticola) R locus (Cr2). Phenotypic segregation was measured by a hypersensitive reaction (HR)-like response on the needles and disease symptoms of cankered stems post inoculation by the C. ribicola avcr2 race. SNP genotypes were determined by HRM- and TaqMan-based SNP genotyping. Saturated maps of the Cr2-linkage group (LG) were constructed in three seed families using a total of 34 SNP markers within 21 unique genes. Cr2 was consistently flanked by contig_2142 (encoding a ruvb-like protein) and contig_3772 (encoding a delta-fatty acid desaturase) across the three seed families. Cr2 was anchored to the Pinus consensus LG-1, which differs from LGs where other R loci of Pinus species were mapped. GO annotation identified a set of NBS-LRR and other resistance-related genes as R candidates in the Cr2 region. Association of one nonsynonymous SNP locus of an NBS-LRR gene with Cr2-mediated phenotypes provides a valuable tool for marker-assisted selection (MAS), which will shorten the breeding cycle of resistance screening and aid in the restoration of WPBR-disturbed forest ecosystems.</div>
</front>
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<DateCompleted><Year>2018</Year>
<Month>01</Month>
<Day>29</Day>
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<DateRevised><Year>2018</Year>
<Month>11</Month>
<Day>13</Day>
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<Issue>9</Issue>
<PubDate><Year>2017</Year>
<Month>Sep</Month>
</PubDate>
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<Title>Plant biotechnology journal</Title>
<ISOAbbreviation>Plant Biotechnol J</ISOAbbreviation>
</Journal>
<ArticleTitle>Saturated genic SNP mapping identified functional candidates and selection tools for the Pinus monticola Cr2 locus controlling resistance to white pine blister rust.</ArticleTitle>
<Pagination><MedlinePgn>1149-1162</MedlinePgn>
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<ELocationID EIdType="doi" ValidYN="Y">10.1111/pbi.12705</ELocationID>
<Abstract><AbstractText>Molecular breeding incorporates efficient tools to increase rust resistance in five-needle pines. Susceptibility of native five-needle pines to white pine blister rust (WPBR), caused by the non-native invasive fungus Cronartium ribicola (J.C. Fisch.), has significantly reduced wild populations of these conifers in North America. Major resistance (R) genes against specific avirulent pathotypes have been found in several five-needle pine species. In this study, we screened genic SNP markers by comparative transcriptome and genetic association analyses and constructed saturated linkage maps for the western white pine (Pinus monticola) R locus (Cr2). Phenotypic segregation was measured by a hypersensitive reaction (HR)-like response on the needles and disease symptoms of cankered stems post inoculation by the C. ribicola avcr2 race. SNP genotypes were determined by HRM- and TaqMan-based SNP genotyping. Saturated maps of the Cr2-linkage group (LG) were constructed in three seed families using a total of 34 SNP markers within 21 unique genes. Cr2 was consistently flanked by contig_2142 (encoding a ruvb-like protein) and contig_3772 (encoding a delta-fatty acid desaturase) across the three seed families. Cr2 was anchored to the Pinus consensus LG-1, which differs from LGs where other R loci of Pinus species were mapped. GO annotation identified a set of NBS-LRR and other resistance-related genes as R candidates in the Cr2 region. Association of one nonsynonymous SNP locus of an NBS-LRR gene with Cr2-mediated phenotypes provides a valuable tool for marker-assisted selection (MAS), which will shorten the breeding cycle of resistance screening and aid in the restoration of WPBR-disturbed forest ecosystems.</AbstractText>
<CopyrightInformation>© 2017 The Authors. Plant Biotechnology Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd.</CopyrightInformation>
</Abstract>
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Saturated genic SNP mapping identified functional candidates and selection tools for the Pinus monticola Cr2 locus controlling resistance to white pine blister rust.

Saturated genic SNP mapping identified functional candidates and selection tools for the Pinus monticola Cr2 locus controlling resistance to white pine blister rust.

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